Faculty of Science

Subterranean clover genomic resources: Building a comprehensive platform for molecular breeding

The aim of this project is to develop a comprehensive pre-breeding research and development plan for annual legumes, to improve the profitability and sustainability of red meat production in Australia.

  1. Summary of the project
  2. Eligibility criteria
  3. Readings
  4. Contact the research team
  5. How to apply
  6. Scholarships

Summary of the project

A multi-agency, public and private sector team is working to develop the pre-breeding research and development plan, led by the Department of Agriculture and Food Western Australia (DAFWA), with collaborating agencies being the South Australian Research and Development Institute (SARDI), New South Wales Department of Primary Industries (NSW DPI) and the Centre for Plant Genetics and Breeding (PGB) at the University of Western Australia (UWA).

Dr Parwinder Kaur is providing the expertise on genomics for this project. Resources already generated through ARC linkage project (LP0669766) provided an excellent platform to proceed to genome sequencing and World Core collection HapMap production.

The availability of the complete genome sequence for subterranean clover provides us with new perspectives on solving genetic problems that are difficult to tackle with conventional approaches, such as identifying the molecular basis of multigenic and complex traits.

So, in collaboration with Kazusa DNA Research Institute (KDRI), Japan, we are proceeding towards the first HapMap (haplotype mapping) using the world’s first Core Collection of Subterranean clover. HapMap (haplotype mapping) techniques recently developed for human genomics offer very precise means of fingerprinting the linkage disequilibrium (LD) regions in the genome by aligning against the reference genome. Since subterranean clover is a self-crossing species, larger LD regions as compared to cross-pollinating species are expected which will be aligned for each line to the reference genome.

Such alignments can be carried out for any trait of interest and markers can be designed to assist in rapid mass screening of cultivars as well for selecting for breeding purposes for subterranean clover.

Allele mining and gene discovery of important traits will facilitate the future breeding of subterranean clover and will not only increase the chances of finding the most climate-smart cultivars but will also open the door to translate this information/techniques across other genera.

PhD/master’s opportunities are available to explore a range of traits including disease and pest resistance, hardseededness, persistence, and frost tolerance, and link them to genomic regions through association mapping.

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Eligibility criteria

General UWA PhD entrance requirements can be found on the Future Students website.

Requirements specific to this project:

  • A supervised research dissertation in a plant biology/genetics and breeding project completed as a program undertaken after a three year, or during a four year, Bachelor,s degree, carrying the equivalent credit of at least 25% of an annual full-time load and awarded an assessed result at or above distinction level
  • Scholarly papers as sole or primary author, appearing in recognised academic journals or in volume published by recognised academic publishers
  • Some basic knowledge of molecular biology will be an added benefit

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Contact the research team leader

Once you have ensured that you meet the eligibility criteria and are ready to discuss a proposal, contact the research team leader to identify a potential supervisor.
Research team leader: Dr Parwinder Kaur
I am working with a team of researchers across various disciplines developing methodologies to enable breeders to identify environmentally-friendly subterranean clover and discover the genes controlling this trait in this species. Subterranean clover is the most common pasture species in Australia, growing on 22 million hectares of Australian farmland.

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How to apply

After you have discussed your project with the research team leader you should be in a position to proceed to step two of the UWA application process: 'Lodge an application'.

Different procedures apply to domestic and international students.

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Domestic students

All domestic students may apply for Research Training Program and University Postgraduate Awards (UPA) scholarships.

The Australian Government's Endeavour Awards and Scholarships are available to Australian applicants for study in participating countries and regions.

International students

A range of scholarships are available from international organisations and governments. The full list, organised by country, is available on the Future Students website.

In addition, all international students may apply for International Research Training Program scholarships.

The Australian Government's Endeavour Awards and Scholarships are available to international applicants from participating countries and regions.

Indigenous students

Indigenous students are encouraged to apply for Indigenous Postgraduate Research Supplementary Scholarships.

Forrest Foundation scholarships

All international and Australian students who wish to study towards the degree of Doctor of Philosophy (PhD) at The University of Western Australia may apply for Forrest Scholarships.

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